blimp.preprocessing.convert_operetta

Convert Perkin-Elmer Operetta image files to standard open microscopy environment formats.

Functions

check_convert_operetta(in_path[, mip, ...])	Check that all files were converted.
check_convert_operetta_dir(in_path[, mip, ...])	Check that all files were converted (single directory).
convert_operetta(in_path, job_path, image_format)	Recursively searches for 'Images' directories and creates a job script to submit a batch of operetta-generated TIFFs for export in the specified format.
find_images_dirs(basepath)
generate_pbs_script(template, input_dir, ...)	Formats a PBS jobscript template using input arguments.