blimp.preprocessing.convert_nd2

Convert Nikon nd2 files to standard open microscopy environment formats.

Functions

convert_nd2(in_path, job_path, image_format)	Recursively searches for .nd2 files and creates a job script to convert to OME-TIFF using blimp.nd2_to_ome_tiff.
find_nd2_files(basepath)	Recursively searches an input directory for.
generate_pbs_script(template, input_dir, ...)	Formats a PBS jobscript template using input arguments.